e10vq
Table of Contents

 
 
UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
WASHINGTON, D.C. 20549
 
FORM 10-Q
QUARTERLY REPORT
PURSUANT TO SECTION 13 OR 15(d)
OF THE SECURITIES EXCHANGE ACT OF 1934
For the quarterly period ended June 30, 2005.
Commission File Number: 1-32261
 
BIOMED REALTY TRUST, INC.
(Exact name of registrant as specified in its charter)
     
Maryland
(State or other jurisdiction of
incorporation or organization)
  20-1142292
(I.R.S. Employer Identification No.)
     
17140 Bernardo Center Drive, Suite 222
San Diego, California

(Address of Principal Executive Offices)
  92128
(Zip Code)
(858) 485-9840
(Registrant’s telephone number, including area code)
 
     Indicate by check mark whether the registrant: (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes þ No ¨
     Indicate by check mark whether the registrant is an accelerated filer (as defined in Rule 12b-2 of the Exchange Act). Yes ¨ No þ
     The number of outstanding shares of the registrant’s common stock, par value $0.01 per share, as of August 11, 2005 was 46,633,098.
 
 

 


Table of Contents

BIOMED REALTY TRUST, INC.
FORM 10-Q — QUARTERLY REPORT
FOR THE QUARTERLY PERIOD ENDED JUNE 30, 2005
TABLE OF CONTENTS
         
    Page  
    3  
    3  
    3  
    4  
    5  
    6  
    7  
    15  
    24  
    25  
    25  
    25  
    25  
    25  
    25  
    26  
    26  
    28  
 EXHIBIT 31.1
 EXHIBIT 31.2
 EXHIBIT 32.1

2


Table of Contents

     PART 1 — FINANCIAL INFORMATION
     ITEM 1. CONSOLIDATED FINANCIAL STATEMENTS
BIOMED REALTY TRUST, INC.
CONSOLIDATED BALANCE SHEETS
(Unaudited)
                 
    June 30, 2005     December 31, 2004  
    (In thousands, except share data)  
ASSETS
               
Rental property, net
  $ 1,028,406     $ 468,488  
Property under development
    5,337        
Investment in unconsolidated partnership
    2,490       2,470  
Cash and cash equivalents
    113,014       27,869  
Restricted cash
    4,592       2,470  
Accounts receivable, net
    5,690       1,837  
Accrued straight-line rents, net
    5,620       3,306  
Acquired above market leases, net
    7,813       8,006  
Deferred leasing costs, net
    143,609       61,503  
Deferred loan costs, net
    5,530       1,700  
Prepaid expenses
    2,627       1,531  
Other assets
    2,417       2,543  
 
           
Total assets
  $ 1,327,145     $ 581,723  
 
           
LIABILITIES AND STOCKHOLDERS’ EQUITY
               
Mortgage notes payable, net
  $ 249,818     $ 102,236  
Secured term loan
    250,000        
Security deposits
    5,976       4,831  
Due to affiliates
          53  
Dividends and distributions payable
    9,265       9,249  
Accounts payable and accrued expenses
    22,324       7,529  
Acquired lease obligations, net
    31,988       13,741  
 
           
Total liabilities
    569,371       137,639  
Minority interests
    21,775       22,267  
Stockholders’ equity:
               
Preferred stock, $.01 par value, 15,000,000 shares authorized, none issued or outstanding
           
Common stock, $.01 par value, 100,000,000 shares authorized, 46,567,058 and 31,386,333 shares issued and outstanding at June 30, 2005 and December 31, 2004, respectively
    465       314  
Additional paid-in capital
    759,228       434,075  
Deferred compensation
    (3,838 )     (4,182 )
Accumulated other comprehensive income
    (1,765 )      
Dividends in excess of earnings
    (18,091 )     (8,390 )
 
           
Total stockholders’ equity
    735,999       421,817  
 
           
Total liabilities and stockholders’ equity
  $ 1,327,145     $ 581,723  
 
           
See accompanying notes to consolidated financial statements.

3


Table of Contents

BIOMED REALTY TRUST, INC. AND
INHALE 201 INDUSTRIAL ROAD, L.P. (PREDECESSOR)
CONSOLIDATED STATEMENTS OF INCOME
(Unaudited)
                 
            INHALE 201  
    BIOMED REALTY     INDUSTRIAL ROAD,  
    TRUST, INC.     L.P. (PREDECESSOR)  
    Three Months     Three Months  
    Ended     Ended  
    June 30, 2005     June 30, 2004  
    (In thousands, except per share data)  
Revenues:
               
Rental
  $ 20,014     $ 1,575  
Tenant recoveries
    8,549       149  
 
           
Total revenues
    28,563       1,724  
 
           
Expenses:
               
Rental operations
    6,721       66  
Real estate taxes
    2,476       88  
Depreciation and amortization
    8,476       236  
General and administrative
    2,695        
 
           
Total expenses
    20,368       390  
 
           
Income from operations
    8,195       1,334  
Equity in net income of unconsolidated partnership
    20        
Interest income
    102        
Interest expense
    (6,812 )     (703 )
 
           
Income before minority interests
    1,505       631  
Minority interests
    (65 )      
 
           
Net income
  $ 1,440     $ 631  
 
           
Basic earnings per share
  $ 0.05          
 
             
Diluted earnings per share
  $ 0.05          
 
             
Weighted-average common shares outstanding:
               
Basic
    31,861,536          
 
             
Diluted
    34,893,367          
 
             
See accompanying notes to consolidated financial statements.

4


Table of Contents

BIOMED REALTY TRUST, INC. AND
INHALE 201 INDUSTRIAL ROAD, L.P. (PREDECESSOR)
CONSOLIDATED STATEMENTS OF INCOME
(Unaudited)
                 
            INHALE 201  
    BIOMED REALTY     INDUSTRIAL ROAD,  
    TRUST, INC.     L.P. (PREDECESSOR)  
    Six Months     Six Months  
    Ended     Ended  
    June 30, 2005     June 30, 2004  
    (In thousands, except per share data)  
Revenues:
               
Rental
  $ 34,228     $ 3,137  
Tenant recoveries
    15,803       299  
Other income
    3,003        
 
           
Total revenues
    53,034       3,436  
 
           
Expenses:
               
Rental operations
    13,116       131  
Real estate taxes
    4,264       176  
Depreciation and amortization
    14,667       478  
General and administrative
    5,245        
 
           
Total expenses
    37,292       785  
 
           
Income from operations
    15,742       2,651  
Equity in net income of unconsolidated partnership
    71        
Interest income
    180       1  
Interest expense
    (8,223 )     (1,389 )
 
           
Income before minority interests
    7,770       1,263  
Minority interests
    (494 )      
 
           
Net income
  $ 7,276     $ 1,263  
 
           
Basic earnings per share
  $ 0.23          
 
             
Diluted earnings per share
  $ 0.23          
 
             
Weighted-average common shares outstanding:
               
Basic
    31,514,608          
 
             
Diluted
    34,544,121          
 
             
See accompanying notes to consolidated financial statements.

5


Table of Contents

BIOMED REALTY TRUST, INC. AND
INHALE 201 INDUSTRIAL ROAD, L.P. (PREDECESSOR)
CONSOLIDATED STATEMENTS OF CASH FLOWS
(Unaudited)
                 
            INHALE 201  
    BIOMED     INDUSTRIAL  
    REALTY     ROAD,L.P.  
    TRUST, INC.     (PREDECESSOR)  
    Six Months     Six Months  
    Ended     Ended  
    June 30, 2005     June 30, 2004  
    (in thousands)  
Operating activities:
               
Net income
  $ 7,276     $ 1,263  
Adjustments to reconcile net income to net cash provided by operating activities:
               
Minority interests
    494        
Depreciation and amortization
    14,667       478  
Bad debt expense
    200        
Revenue reduction attributable to acquired above market leases
    813        
Revenue recognized related to acquired lease obligations
    (991 )      
Vesting of restricted common stock
    1,531        
Amortization of loan costs
    2,333       42  
Interest expense reduction for amortization of debt premium
    (650 )      
Income from unconsolidated partnership
    (71 )      
Distributions received from unconsolidated partnership
    51        
Changes in operating assets and liabilities:
               
Restricted cash
    (2,122 )      
Accounts receivable
    (4,053 )      
Accrued straight-line rents
    (2,314 )     (281 )
Deferred leasing costs
    (710 )      
Prepaid expenses
    (1,096 )      
Other assets
    126       (74 )
Security deposits
    437        
Due to affiliates
    (53 )      
Accounts payable and accrued expenses
    7,170       (64 )
 
           
Net cash provided by operating activities
    23,038       1,364  
 
           
Investing activities:
               
Purchases of interests in and additions to rental property and related intangible assets
    (488,668 )      
Purchase of interests in and additions to property under development
    (5,337 )      
Security deposits received from prior owners of rental property
    708        
Accrued construction and tenant improvement costs
    5,860        
Receipts of master lease payments (reduction to rental property)
    1,303        
 
           
Net cash used in investing activities
    (486,134 )      
 
           
Financing activities:
               
Proceeds from common stock offering
    340,256        
Payment of offering costs
    (16,139 )      
Payment of loan costs
    (6,163 )      
Line of credit proceeds
    227,175        
Line of credit payments
    (227,175 )      
Secured term loan proceeds
    250,000        
Unsecured term loan proceeds
    100,000        
Unsecured term loan payments
    (100,000 )      
Principal payments on mortgage notes payable
    (1,202 )     (446 )
Distributions to operating partnership unit holders
    (1,550 )      
Dividends paid
    (16,961 )      
Distributions to owners of Predecessor
          (1,018 )
 
           
Net cash provided by (used in) financing activities
    548,241       (1,464 )
 
           
Net increase (decrease) in cash and cash equivalents
    85,145       (100 )
Cash and cash equivalents at beginning of period
    27,869       157  
 
           
Cash and cash equivalents at end of period
  $ 113,014     $ 57  
 
           
Supplemental disclosure of cash flow information:
               
Cash paid during the period for interest (net of amounts capitalized of $171 and $0, respectively)
  $ 4,288     $ 1,381  
Supplemental disclosure of non-cash investing and financing activities:
               
Accrual for dividends declared
    8,490        
Accrual for distributions declared for operating partnership unit holders
    775        
Restricted stock awards
    1,187        
Mortgage loans assumed (includes premium of $11,229)
    149,434        
See accompanying notes to consolidated financial statements.

6


Table of Contents

BIOMED REALTY TRUST, INC. AND
INHALE 201 INDUSTRIAL ROAD, L.P. (PREDECESSOR)
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
(Unaudited)
1. Organization and Description of Business
     As used herein, the terms “we,” “us,” “our” or the “Company” refer to BioMed Realty Trust, Inc., a Maryland corporation, and any of our subsidiaries, including BioMed Realty, L.P., a Maryland limited partnership (our “Operating Partnership”), and 201 Industrial Road, L.P. (“Industrial Road” or our “Predecessor”). We operate as a fully integrated, self-administered and self-managed real estate investment trust (“REIT”) focused on acquiring, developing, owning, leasing and managing laboratory and office space for the life science industry. The Company’s tenants include biotechnology and pharmaceutical companies, scientific research institutions, government agencies and other entities involved in the life science industry. The Company’s current properties and its primary acquisition targets are located in markets with well established reputations as centers for scientific research, including Boston, San Diego, San Francisco, Seattle, Maryland, Pennsylvania and New York/New Jersey.
     The Company was incorporated in Maryland on April 30, 2004. On August 11, 2004, the Company commenced operations after completing its initial public offering (the “Offering”) of 27,000,000 shares of its common stock, par value $.01 per share. The Offering price was $15.00 per share resulting in gross proceeds of $405.0 million. On August 16, 2004, in connection with the exercise of the underwriters’ over-allotment option, the Company issued an additional 4,050,000 shares of common stock and received gross proceeds of $60.8 million. The aggregate proceeds to the Company, net of underwriting discounts and commissions and Offering costs, were approximately $429.3 million. The Company issued a stock warrant in connection with the Offering to the lead underwriter for the right to purchase 270,000 common shares at $15.00 per share, which equals the estimated fair value at the date of grant. The warrant became exercisable six months after the Offering date and expires five years after the Offering date. From inception through August 11, 2004, neither the Company nor its Operating Partnership had any operations. Simultaneously with the Offering, the Company obtained a $100.0 million revolving unsecured credit facility (Note 5), which was used to finance acquisitions and for other corporate purposes prior to being replaced on May 31, 2005 with a $250.0 million revolving unsecured credit facility with KeyBank National Association and other lenders (Note 5).
     On June 27, 2005, we completed a follow-on common stock offering of 15,122,500 shares at $22.50 per share, resulting in gross proceeds of $340.3 million. The net proceeds of $324.1 million were used to repay the outstanding balance on our revolving credit facility (Note 5), to repay our $100.0 million unsecured term loan (Note 5), and for other corporate purposes. The Company expects to use the remaining proceeds for future property acquisitions and for other general corporate and working capital purposes.
     As of June 30, 2005, we owned or had interests in 33 properties, located in Boston, San Diego, San Francisco, Seattle, Maryland, Pennsylvania, New York and New Jersey, consisting of 56 buildings with approximately 4.3 million rentable square feet of laboratory and office space, which was approximately 92.3% leased to 78 tenants. Of the remaining unleased space, 183,838 square feet, or 4.3% of our total rentable square footage, was under redevelopment. We also owned undeveloped land that we estimate can support up to 600,000 rentable square feet of laboratory and office space.
     Industrial Road was the largest of the properties contributed in the Offering and therefore has been identified as the accounting acquirer pursuant to paragraph 17 of Statement of Financial Accounting Standards (“SFAS”) No. 141, Business Combinations (“SFAS 141”). As such, the historical financial statements presented herein for Industrial Road were prepared on a stand-alone basis up to and including the acquisition date, August 17, 2004. Upon completion of the Offering, the interest in the Predecessor acquired from affiliates was recorded at historic cost. The acquisitions of the unaffiliated interests in the Predecessor and the interests in all of the other properties have been accounted for as a purchase in accordance with SFAS 141.

7


Table of Contents

2. Basis of Presentation and Summary of Significant Accounting Policies
     The accompanying interim financial statements are unaudited, but have been prepared in accordance with U.S. generally accepted accounting principles (“GAAP”) for interim financial information and in conjunction with the rules and regulations of the Securities and Exchange Commission. Accordingly, they do not include all the disclosures required by GAAP for complete financial statements. In the opinion of management, all adjustments necessary for a fair presentation of the financial statements for these interim periods have been included. These financial statements should be read in conjunction with the audited consolidated financial statements and notes thereto included in our annual report on Form 10-K for the year ended December 31, 2004.
Principles of Consolidation
     The consolidated financial statements include the accounts of the Company, its wholly owned subsidiaries, and partnerships and limited liability companies it controls. All material intercompany transactions and balances have been eliminated. The Company consolidates entities the Company controls and records a minority interest for the portions not owned by the Company. Control is determined, where applicable, by the sufficiency of equity invested and the rights of the equity holders, and by the ownership of a majority of the voting interests, with consideration given to the existence of approval or veto rights granted to the minority shareholder. If the minority shareholder holds substantive participation rights, it overcomes the presumption of control by the majority voting interest holder. In contrast, if the minority shareholder simply holds protective rights (such as consent rights over certain actions), it does not overcome the presumption of control by the majority voting interest holder. With respect to the partnerships and limited liability companies, the Company determines control through a consideration of each party’s financial interests in profits and losses and the ability to participate in major decisions such as the acquisition, sale or refinancing of principal assets.
Investments in Rental Property
     Rental property, net consists of the following (in thousands):
                 
    June 30, 2005     December 31, 2004  
Land
  $ 114,479     $ 68,755  
Ground lease
    14,210       14,217  
Buildings and improvements
    901,034       388,502  
Tenant improvements
    8,232       283  
 
           
 
    1,037,955       471,757  
Accumulated depreciation
    (9,549 )     (3,269 )
 
           
 
  $ 1,028,406     $ 468,488  
 
           
     The Company has recorded a preliminary allocation of purchase price to tangible and intangible assets as of June 30, 2005 and, prior to September 30, 2005, will finalize the allocations for acquisitions completed in the second quarter.
Revenue Recognition
     Lease termination fees are recognized when the related leases are canceled and we have no continuing obligation to provide services to former tenants. A gain on early termination of lease of $3.0 million for the six months ended June 30, 2005 is included in other income on the consolidated statements of income and was due to the early termination of a portion of the Nektar Therapeutics lease at our Industrial Road property. Accordingly, the related lease commissions and other related intangible assets have been fully amortized.
Impairment of Long-Lived Assets and Long-Lived Assets to be Disposed
     The Company reviews long-lived assets and certain identifiable intangibles for impairment whenever events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable. Recoverability of

8


Table of Contents

assets to be held and used is measured by a comparison of the carrying amount of an asset to future net cash flows, undiscounted and without interest, expected to be generated by the asset. If such assets are considered to be impaired, the impairment to be recognized is measured by the amount by which the carrying amount of the assets exceeds the fair value of the assets. Assets to be disposed of are reported at the lower of the carrying amount or fair value less costs to sell.
Income Taxes
     We will elect to be taxed as a REIT under the Internal Revenue Code of 1986, as amended, commencing with our taxable year ended December 31, 2004. We believe we have qualified and continue to qualify as a REIT. As a REIT, we will be permitted to deduct distributions paid to our stockholders and generally will not be required to pay federal corporate income taxes on such income. Accordingly, no provision has been made for federal income taxes in the accompanying consolidated financial statements.
Management’s Estimates
     Management of the Company has made a number of estimates and assumptions relating to the reporting of assets and liabilities and the disclosure of contingent assets and liabilities at the date of the financial statements and the reporting of revenue and expenses during the reporting period to prepare these financial statements in conformity with GAAP. The Company bases its estimates on historical experience and on various other assumptions that are believed to be reasonable under the circumstances, the results of which form the basis for making judgments about the carrying values of assets and liabilities and reported amounts of revenue and expenses that are not readily apparent from other sources. Actual results could differ from those estimates under different assumptions or conditions.
3. Minority Interests
     Minority interests on the consolidated balance sheets relate to the limited partnership units in the Operating Partnership (“Units”) that are not owned by the Company, which at June 30, 2005 amounted to 5.84% of Units outstanding. In conjunction with the formation of the Company, certain persons and entities contributing interests in properties to the Operating Partnership received Units. Limited partners who were issued Units in the formation transactions have the right, commencing approximately one year after the Offering, to require the Operating Partnership to redeem part or all of their Units for cash based upon the fair market value of an equivalent number of shares of the Company’s common stock at the time of redemption. Alternatively, the Company may elect to acquire those Units in exchange for shares of the Company’s common stock on a one-for-one basis, subject to adjustment in the event of stock splits, stock dividends, issuance of stock rights, specified extraordinary distributions and similar events. Minority interests also include an 11% interest of a limited partner in the limited partnership that owns the King of Prussia property and a 10% interest of a limited partner in the limited liability company that owns the Waples property, which are consolidated entities of the Company.
4. Mortgage Notes Payable
     A summary of our outstanding consolidated secured indebtedness as of June 30, 2005 is as follows (in thousands):
                                                         
    Stated                                        
    Fixed     Effective             Unamortized     Carrying     Carrying        
    Interest     Interest     Principal     Premium     Value at     Value at        
    Rate     Rate     Amount     Amount     June 30, 2005     December 31, 2004     Maturity Date  
Ardentech Court
    7.25 %     5.06 %   $ 4,787     $ 572     $ 5,359     $ 5,440     July 1, 2012
Bayshore Boulevard
    4.55 %     4.55 %     16,289             16,289       16,438     January 1, 2010
Bridgeview
    8.07 %     5.04 %     11,782       1,703       13,485       13,681     January 1, 2011
Eisenhower Road
    5.80 %     4.63 %     2,229       67       2,296       2,331     May 5, 2008
Elliott Avenue
    7.38 %     4.63 %     16,765       923       17,688       18,107     November 24, 2007
40 Erie Street
    7.34 %     4.90 %     20,041       1,302       21,343           August 1, 2008
Kendall Square D
    6.38 %     5.45 %     73,078       5,486       78,564           December 1, 2018
Lucent Drive
    5.50 %     5.50 %     5,986             5,986           January 21, 2015
Monte Villa Parkway
    4.55 %     4.55 %     9,916             9,916       10,007     January 1, 2010
Nancy Ridge Drive
    7.15 %     5.57 %     6,989       670       7,659           September 1, 2012
Science Center Drive
    7.65 %     5.04 %     11,638       1,549       13,187       13,376     July 1, 2011
Sidney Street
    7.23 %     5.11 %     31,755       3,642       35,397           June 1, 2012
Towne Centre Drive
    4.55 %     4.55 %     22,649             22,649       22,856     January 1, 2010
 
                                               
 
                  $ 233,904     $ 15,914     $ 249,818     $ 102,236          
 
                                               

9


Table of Contents

     Premiums were recorded upon assumption of the mortgage notes payable at the time of acquisition to account for above-market interest rates. Amortization of these premiums is recorded as a reduction to interest expense over the remaining term of the respective note.
5. Credit Facilities
     On August 11, 2004, the Company entered into a $100.0 million revolving unsecured loan agreement, which bore interest at LIBOR plus 1.20%, or higher depending on the leverage ratio of the Company, or a reference rate, and was scheduled to expire on August 11, 2007. This credit facility was fully repaid and terminated on May 31, 2005 with funds drawn on our new credit facilities as discussed below. Accordingly, the related unamortized loan costs of $900,000 have been fully amortized.
     On May 31, 2005, we entered into three credit facilities with KeyBank National Association and other lenders under which we initially borrowed $485.0 million of a total of $600.0 million available under these facilities. The credit facilities include an unsecured revolving credit facility of $250.0 million, under which we initially borrowed $135.0 million, an unsecured term loan of $100.0 million and a secured term loan of $250.0 million. We borrowed the full amounts under the unsecured term loan and secured term loan. The unsecured revolving credit facility and unsecured term loan have a maturity date of May 30, 2008 and bear interest at a floating rate equal to, at our option, either (1) reserve adjusted LIBOR plus a spread which ranges from 120 to 200 basis points, depending on our leverage, or (2) the higher of (a) the prime rate then in effect plus a spread which ranges from 0 to 50 basis points and (b) the federal funds rate then in effect plus a spread which ranges from 50 to 100 basis points, in each case, depending on our leverage. We may extend the maturity date of the unsecured credit facilities to May 30, 2009 after satisfying certain conditions and paying an extension fee, and we may increase the amount of the revolving credit facility to $400.0 million upon satisfying certain conditions. The secured term loan, which has a maturity date of May 30, 2010, is initially secured by 13 of our properties and bears interest at a floating rate equal to, at our option, either (1) reserve adjusted LIBOR plus 225 basis points or (2) the higher of (a) the prime rate then in effect plus 50 basis points and (b) the federal funds rate then in effect plus 100 basis points. The secured term loan is also secured by our interest in any distributions from these properties and a pledge of the equity interests in a subsidiary owning one of these properties. We may not prepay the secured term loan prior to May 31, 2006. We entered into an interest rate swap agreement in connection with the closing of the credit facilities, which will have the effect of fixing the interest rate on the secured term loan at 6.4%. The $100.0 million unsecured term loan facility was fully repaid with the proceeds from our common stock offering (Note 1) and terminated on June 27, 2005. Accordingly, related loan costs of $1.1 million have been fully amortized. At June 30, 2005, we had no outstanding borrowings on our unsecured revolving credit facility.
     The terms of the credit agreements include certain restrictions and covenants, which limit, among other things, the payment of dividends, and the incurrence of additional indebtedness and liens. The terms also require compliance with financial ratios relating to the minimum amounts of net worth, fixed charge coverage, unsecured debt service coverage, interest coverage, the maximum amount of secured, variable-rate and recourse indebtedness, leverage ratio, and certain investment limitations. The dividend restriction referred to above provides that, except to enable the Company to continue to qualify as a REIT for federal income tax purposes, the Company will not for any fiscal quarter ending on or prior to September 30, 2005 or during any four consecutive quarters thereafter, make distributions with respect to common stock or other equity interests in an aggregate amount in excess of 95% of funds from operations, as defined, for such period, subject to other adjustments or make distributions in excess of 100% of funds available for distribution, as defined, for such period, subject to other adjustments. Management believes that it was in compliance with the covenants as of June 30, 2005.

10


Table of Contents

6. Earnings Per Share
     Earnings per share is calculated based on the weighted-average number of shares of our common stock outstanding during the period. The effect of the outstanding Units, vesting of unvested restricted stock that has been granted or has been committed to be granted, and the assumed exercise of the stock warrant, using the treasury method, were dilutive and included in the calculation of diluted weighted-average shares for the three months and for the six months ended June 30, 2005.
     The following sets forth information related to the computations of basic and diluted earnings per share in accordance with SFAS No. 128, Earnings per Share (in thousands, except per share amounts):
                 
    For the Six     For the Three  
    Months Ended     Months Ended  
    June 30, 2005     June 30, 2005  
Net income attributable to common shares
  $ 7,276     $ 1,440  
Operating partnership unit share in earnings of minority interest (1)
    668       130  
 
           
Adjusted net income attributable to common shares
  $ 7,944     $ 1,570  
 
           
Weighted-average common shares outstanding:
               
Basic
    31,514,608       31,861,536  
Incremental shares from assumed conversion/exercise:
               
Stock warrant
    77,540       79,858  
Vesting of restricted stock
    81,409       81,409  
Operating Partnership Units
    2,870,564       2,870,564  
 
           
Diluted
    34,544,121       34,893,367  
 
           
Earnings per share — basic and diluted
  $ 0.23     $ 0.05  
 
           
 
(1)   Does not include minority interest for the limited partner’s interest in the King of Prussia property of $(174,000) and $(65,000), respectively, for the six months and three months ended June 30, 2005.
7. Incentive Award Plan
     During the three and six months ended June 30, 2005, respectively, the Company granted 12,000 and 58,225 shares of restricted stock under the BioMed Realty Trust, Inc. and BioMed Realty, L.P. 2004 Incentive Award Plan (the “Plan”). As a result, an additional $1.2 million was added to deferred compensation. For the three and six months ended June 30, 2005, $825,000 and $1.5 million, respectively, of stock-based compensation expense was recognized in general and administrative expense.
8. Segment Information
     The Company’s segments are based on its method of internal reporting which classifies its operations by geographic area. The Company’s segments by geographic area are Boston, San Francisco, San Diego, Seattle, New York and New Jersey, Pennsylvania and Maryland. The rental operations expenses at the “Corporate and Other” segment consist primarily of the corporate level management of the properties.
     The principal financial measure of the performance of a segment used by the Company is Net Operating Income. Net Operating Income is not a measure of operating results or cash flows from operating activities as measured by GAAP, and it is not indicative of cash available to fund cash needs and should not be considered as an alternative to cash flows as a measure of liquidity. All companies may not calculate Net Operating Income in the same manner. The Company considers Net Operating Income to be an appropriate supplemental measure to net income because it helps both investors and management to understand the core operations of the Company’s properties. Net Operating Income is derived by deducting rental operations and real estate tax expenses from rental revenues and tenant recoveries.
     The Predecessor operated in one geographic area — San Francisco.
     Information by geographic area (dollars in thousands):
     For the six months ended June 30, 2005:

11


Table of Contents

                                                                         
                                    New York                     Corporate        
            San                     and                     and        
    Boston     Francisco     San Diego     Seattle     New Jersey     Pennsylvania     Maryland     Other     Total  
Rental revenues and tenant recoveries
  $ 5,974     $ 7,151     $ 7,937     $ 4,426     $ 16,048     $ 6,420     $ 2,042     $ 33     $ 50,031  
Rental operations and real estate tax expenses
    1,178       1,108       1,546       519       9,555       2,860       160       454       17,380  
 
                                                     
Net operating income
    4,796       6,043       6,391       3,907       6,493       3,560       1,882       (421 )     32,651  
Equity in net income of unconsolidated partnership
                71                                     71  
Other income
          3,003                                           3,003  
Interest income
    2       84       7             1       6             80       180  
Depreciation and amortization
    (1,888 )     (2,535 )     (3,243 )     (1,592 )     (3,149 )     (1,908 )     (352 )           (14,667 )
General and administrative
                                              (5,245 )     (5,245 )
Interest expense
    (616 )     (780 )     (851 )     (670 )           (54 )           (5,252 )     (8,223 )
Minority interests
                                  174             (668 )     (494 )
 
                                                     
Net income
  $ 2,294     $ 5,815     $ 2,375     $ 1,645     $ 3,345     $ 1,778       1,530     $ (11,506 )   $ 7,276  
 
                                                     
Investment in unconsolidated partnership
              $ 2,490                                   $ 2,490  
 
                                                     
Total assets
  $ 589,752     $ 167,905     $ 145,720     $ 69,447     $ 109,398     $ 105,355     $ 32,308     $ 107,260     $ 1,327,145  
                                                                         
                                    New York                     Corporate        
            San                     and                     and        
    Boston     Francisco     San Diego     Seattle     New Jersey     Pennsylvania     Maryland     Other     Total  
% of total revenues
    11.9 %     14.3 %     15.9 %     8.8 %     32.1 %     12.8 %     4.1 %     0.1 %     100.0 %
% of total rental operations expenses
    6.8 %     6.4 %     8.9 %     3.0 %     55.0 %     16.4 %     0.9 %     2.6 %     100.0 %
 
                                                     
% of total net operating income
    14.7 %     18.5 %     19.6 %     12.0 %     19.9 %     10.8 %     5.8 %     (1.3 )%     100.0 %
% of total equity income of unconsolidated partnership
                100.0 %                                   100.0 %
% of other income
          100.0 %                                         100.0 %
% of total interest income
    1.1 %     46.7 %     3.9 %           0.6 %     3.3 %           44.4 %     100.0 %
% of total depreciation and amortization
    (12.9 )%     (17.3 )%     (22.1 )%     (10.8 )%     (21.5 )%     (13.0 )%     (2.4 )%           (100.0 )%
% of total general and administrative
                                              (100.0 )%     (100.0 )%
% of total interest expense
    (7.5 )%     (9.5 )%     (10.3 )%     (8.1 )%           (0.7 )%           (63.9 )%     (100.0 )%
% of total minority interests
                                  35.2 %           (135.2 )%     (100.0 )%
 
                                                     
% of total net income
    31.5 %     79.9 %     32.6 %     22.6 %     46.0 %     24.5 %     21.0 %     (158.1 )%     100.0 %
 
                                                     
     For the three months ended June 30, 2005:
                                                                         
                                    New York                     Corporate        
            San                     and                     and        
    Boston     Francisco     San Diego     Seattle     New Jersey     Pennsylvania     Maryland     Other     Total  
Rental revenues and tenant recoveries
  $ 5,974     $ 3,604     $ 4,209     $ 2,193     $ 8,161     $ 3,367     $ 1,022     $ 33     $ 28,563  
Rental operations and real estate tax expenses
    1,178       574       818       232       4,777       1,251       79       288       9,197  
 
                                                     
Net operating income
    4,796       3,030       3,391       1,961       3,384       2,116       943       (255 )     19,366  
Equity in net income of unconsolidated partnership
                20                                     20  
Other income
                                                     
Interest income
    2       53       5                   5             37       102  
Depreciation and amortization
    (1,888 )     (1,200 )     (1,794 )     (796 )     (1,610 )     (1,012 )     (176 )           (8,476 )
General and administrative
                                              (2,695 )     (2,695 )
Interest expense
    (616 )     (358 )     (440 )     (334 )           (27 )           (5,037 )     (6,812 )
Minority interests
                                  65             (130 )     (65 )
 
                                                     
Net income
  $ 2,294     $ 1,525     $ 1,182     $ 831     $ 1,774     $ 1,147       767     $ (8,080 )   $ 1,440  
 
                                                     
Investment in unconsolidated partnership
              $ 2,490                                   $ 2,490  
 
                                                     
Total assets
  $ 589,752     $ 167,905     $ 145,720     $ 69,447     $ 109,398     $ 105,355     $ 32,308     $ 107,260     $ 1,327,145  
                                                                         
                                    New York                     Corporate        
            San                     and                     and        
    Boston     Francisco     San Diego     Seattle     New Jersey     Pennsylvania     Maryland     Other     Total  
% of total revenues
    20.9 %     12.6 %     14.7 %     7.7 %     28.6 %     11.8 %     3.6 %     0.1 %     100.0 %
% of total rental operations expenses
    12.8 %     6.3 %     8.9 %     2.5 %     51.9 %     13.6 %     0.9 %     3.1 %     100.0 %
 
                                                     
% of total net operating income
    24.8 %     15.6 %     17.5 %     10.1 %     17.5 %     10.9 %     4.9 %     (1.3 )%     100.0 %
% of total equity income of unconsolidated partnership
                100.0 %                                   100.0 %
% of other income
                                                       
% of total interest income
    2.0 %     52.0 %     4.9 %                 4.9 %           36.2 %     100.0 %
% of total depreciation and amortization
    (22.3 )%     (14.1 )%     (21.2 )%     (9.4 )%     (19.0 )%     (11.9 )%     (2.1 )%           (100.0 )%
% of total general and administrative
                                              (100.0 )%     (100.0 )%
% of total interest expense
    (9.0 )%     (5.3 )%     (6.5 )%     (4.9 )%           (0.4 )%           (73.9 )%     (100.0 )%
% of total minority interests
                                  100.0 %           (200.0 )%     (100.0 )%
 
                                                     
% of total net income
    159.3 %     105.9 %     82.1 %     57.7 %     123.2 %     79.6 %     53.3 %     (561.1 )%     100.0 %
 
                                                     

12


Table of Contents

9. Property Acquisitions
     The Company acquired interests in 16 properties, including one parking structure, during the six months ended June 30, 2005 (dollars in thousands):
                                                 
    Market     Acquisition Date     Rentable Square Feet     Investment     Debt Assumed (1)     Percent Leased  
First Quarter 2005
                                               
Waples
  San Diego   March 1, 2005     43,036     $ 5,324     $       65.3 %
Bridgeview
  San Francisco   March 16, 2005     50,400       16,219             100.0 %
Graphics Drive
  New Jersey   March 17, 2005     72,300       7,787             14.8 %
 
                                       
First Quarter Total
                    165,736     $ 29,330     $       47.4 %
 
                                       
Second Quarter 2005
                                               
Fresh Pond Research Park
  Boston   April 5, 2005     90,702       20,768             83.3 %
Coolidge Avenue
  Boston   April 5, 2005     37,400       10,837             100.0 %
Phoenixville Pike
  Pennsylvania   April 5, 2005     104,400       13,240             49.6 %
Nancy Ridge Drive
  San Diego   April 21, 2005     42,138       12,974       7,001       100.0 %
Dumbarton Circle
  San Francisco   May 27, 2005     44,000       8,959             100.0 %
Lucent Drive
  Boston   May 31, 2005     21,500       7,142       6,014       100.0 %
21 Erie Street
  Boston   May 31, 2005     48,238       11,939             58.1 %
Vassar Street
  Boston   May 31, 2005     52,520       17,850             100.0 %
Albany Street
  Boston   May 31, 2005     75,003       38,444             99.8 %
40 Erie Street
  Boston   May 31, 2005     100,854       45,755       20,192       100.0 %
Sidney Street
  Boston   May 31, 2005     191,904       51,015       31,809       100.0 %
Kendall Square A
  Boston   May 31, 2005     302,919       150,843             96.7 %
Kendall Square D
  Boston   May 31, 2005     349,325       192,583       73,189       98.2 %
47 Erie Street Parking Structure
  Boston   May 31, 2005     n/a       10,180             n/a  
 
                                       
Second Quarter Total
                    1,460,903     $ 592,529     $ 138,205       92.9 %
 
                                       
Total
                    1,626,639     $ 621,859     $ 138,205       88.2 %
 
                                       
 
(1)   Excludes $11,229 of debt premium.
10. Derivative Financial Instruments
     The Company records all derivatives on the balance sheet at fair value. The accounting for changes in the fair value of derivatives depends on the intended use of the derivative and the resulting designation. Derivatives used to hedge the exposure to changes in the fair value of an asset, liability, or firm commitment attributable to a particular risk, such as interest rate risk, are considered fair value hedges. Derivatives used to hedge the exposure to variability in expected future cash flows, or other types of forecasted transactions, are considered cash flow hedges.
     For derivatives designated as fair value hedges, changes in the fair value of the derivative and the hedged item related to the hedged risk are recognized in earnings. For derivatives designated as cash flow hedges, the effective portion of changes in the fair value of the derivative is initially reported in other comprehensive income (outside of earnings) and subsequently reclassified to earnings when the hedged transaction affects earnings, and the ineffective portion of changes in the fair value of the derivative is recognized directly in earnings. The Company assesses the effectiveness of each hedging relationship by comparing the changes in fair value or cash flows of the derivative hedging instrument with the changes in fair value or cash flows of the designated hedged item or transaction. For derivatives not designated as hedges, changes in fair value are recognized in earnings.
     The Company’s objective in using derivatives is to add stability to interest expense and to manage its exposure to interest rate movements or other identified risks. To accomplish this objective, the Company primarily uses interest rate swaps as part of its cash flow hedging strategy. Interest rate swaps designated as cash flow hedges involve the receipt of variable-rate amounts in exchange for fixed-rate payments over the life of the agreements without exchange of the underlying principal amount. During 2005, one such derivative has been used to hedge the variable cash flows associated with existing variable-rate debt. We formally documented the hedging relationship and account for our interest rate swap agreement as a cash flow hedge.

13


Table of Contents

     As of June 30, 2005, no derivatives were designated as fair value hedges or hedges of net investments in foreign operations. Additionally, the Company does not use derivatives for trading or speculative purposes and currently does not have any derivatives that are not designated as hedges. As of June 30, 2005, our one interest rate swap had a notional amount of $250.0 million, whereby we pay a fixed rate of 6.4% and receive a floating one-month LIBOR. This agreement expires on June 1, 2010, and no initial investment was made to enter into this agreement. At June 30, 2005, the interest rate swap agreement had a fair value of $1.8 million which is included in other liabilities. The change in net unrealized gains/losses of $1.8 million in 2005 for derivatives designated as cash flow hedges is separately disclosed in the statement of changes in stockholders’ equity and comprehensive income. No hedge ineffectiveness on cash flow hedges has been recognized during 2005.
11. Subsequent Events
     During the third quarter of 2005, the Company granted 68,449 shares of restricted stock with an aggregate value of $1.6 million to officers and employees pursuant to the Plan. These shares vest in two equal installments on January 1, 2007 and 2008.

14


Table of Contents

ITEM 2. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS
     The following discussion should be read in conjunction with the financial statements and notes thereto appearing elsewhere in this report. We make statements in this report that are forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995. In particular, statements pertaining to our capital resources, portfolio performance and results of operations contain forward-looking statements. Forward-looking statements involve numerous risks and uncertainties and you should not rely on them as predictions of future events. Forward-looking statements depend on assumptions, data or methods which may be incorrect or imprecise, and we may not be able to realize them. We do not guarantee that the transactions and events described will happen as described (or that they will happen at all). You can identify forward-looking statements by the use of forward-looking terminology such as “believes,” “expects,” “may,” “will,” “should,” “seeks,” “approximately,” “intends,” “plans,” “estimates” or “anticipates” or the negative of these words and phrases or similar words or phrases. You can also identify forward-looking statements by discussions of strategy, plans or intentions. The following factors, among others, could cause actual results and future events to differ materially from those set forth or contemplated in the forward-looking statements: general risks affecting the real estate industry (including, without limitation, the inability to enter into or renew leases, dependence on tenants’ financial condition, and competition from other developers, owners and operators of real estate); adverse economic or real estate developments in the life science industry or the Boston or California regions; risks associated with the availability and terms of financing and the use of debt to fund acquisitions and developments; failure to manage effectively our growth and expansion into new markets, or to complete or integrate acquisitions successfully; risks and uncertainties affecting property development and construction; risks associated with downturns in the national and local economies, increases in interest rates, and volatility in the securities markets; potential liability for uninsured losses and environmental contamination; risks associated with our potential failure to qualify as a REIT under the Internal Revenue Code of 1986, as amended, or the Code, and possible adverse changes in tax and environmental laws; and risks associated with our dependence on key personnel whose continued service is not guaranteed. We disclaim any intention or obligation to update or revise any forward-looking statements, whether as a result of new information, future events or otherwise.
     The risks included here are not exhaustive, and additional factors could adversely affect our business and financial performance, including factors and risks included in other sections of this report. In addition, we discussed a number of material risks in our annual report on Form 10-K for the year ended December 31, 2004. Those risks continue to be relevant to our performance and financial condition. Moreover, we operate in a very competitive and rapidly changing environment. New risk factors emerge from time to time and it is not possible for management to predict all such risk factors, nor can it assess the impact of all such risk factors on our company’s business or the extent to which any factor, or combination of factors, may cause actual results to differ materially from those contained in any forward-looking statements. Given these risks and uncertainties, investors should not place undue reliance on forward-looking statements as a prediction of actual results.
     A more complete discussion of our critical accounting policies can be found in our annual report on Form 10-K for the year ended December 31, 2004.
Overview
     We operate as a REIT focused on acquiring, developing, owning, leasing and managing laboratory and office space for the life science industry. Our tenants include biotechnology and pharmaceutical companies, scientific research institutions, government agencies and other entities involved in the life science industry. Our current properties and our primary acquisition targets are located in markets with well established reputations as centers for scientific research, including Boston, San Diego, San Francisco, Seattle, Maryland, Pennsylvania and New York/New Jersey.
     At June 30, 2005, we owned or had interests in 33 properties, located in Boston, San Diego, San Francisco, Seattle, Maryland, Pennsylvania, New York and New Jersey, consisting of 56 buildings with approximately 4.3 million rentable square feet of laboratory and office space. We also owned undeveloped land that we estimate can support up to 600,000 rentable square feet of laboratory and office space.
     We were formed on April 30, 2004 and commenced operations on August 11, 2004, after completing our initial public offering.

15


Table of Contents

Factors Which May Influence Future Operations
     As of June 30, 2005, our property portfolio was 92.3% leased to 78 tenants. Of the remaining unleased space, approximately 183,838 square feet, or 4.3% of the company’s total rentable square footage, was under redevelopment. Approximately 3.3% of our leased square footage expires during 2005 and approximately 3.8% of our leased square footage expires during 2006. Our leasing strategy for 2005 focuses on leasing currently vacant space and negotiating renewals for leases scheduled to expire during the year, and identifying new tenants or existing tenants seeking additional space to occupy the spaces for which we are unable to negotiate such renewals. Additionally, we will seek to lease space that is currently under master lease arrangements at our Bayshore and King of Prussia properties, which expire in 2006 and 2008, respectively.
     Our corporate strategy is to continue to focus on acquiring, developing, owning, leasing and managing laboratory and office space for the life science industry. Our leasing strategy focuses on executing long-term leases with creditworthy tenants. We also intend to proceed with new developments, when prudent.
     The success of our leasing and development strategy will be dependent upon the general economic conditions in the United States and in our target markets of Boston, San Diego, San Francisco, Seattle, Maryland, Pennsylvania and New York/New Jersey.
Critical Accounting Policies
     In December 2004, FASB issued SFAS No. 123R, Share-Based Payment (“SFAS 123R”). SFAS 123R replaces SFAS 123. SFAS 123R requires the compensation cost relating to share-based payment transactions be recognized in financial statements and be measured based on the fair value of the equity instrument issued. SFAS 123R is effective in annual reporting periods beginning after December 15, 2005. As of June 30, 2005, our equity issuances for compensation have consisted entirely of restricted stock grants to directors and employees. We do not believe that the treatment of our restricted stock grants under SFAS 123R differs from the treatment under SFAS 123. As a result, we do not expect the adoption of SFAS 123R to have a material impact on our results of operations, financial position or liquidity.
Results of Operations
     The following is a comparison of the three and six months ended June 30, 2005 of the consolidated operating results of BioMed Realty Trust, Inc., to the combined operating results of 201 Industrial Road, L.P., our predecessor, and Bernardo Center Drive, Science Center Drive and Balboa Avenue for the three and six months ended June 30, 2004. We refer to Bernardo Center Drive, Science Center Drive and Balboa Avenue as the Combined Contribution Properties. As part of our formation transactions, our predecessor was contributed to us in exchange for 1,461,451 units in our Operating Partnership, and the Combined Contribution Properties, which were under common management with our predecessor, were contributed to us in exchange for 1,153,708 units in our Operating Partnership.
     Our predecessor is considered for accounting purposes to be our acquirer. As such, the historical financial statements presented herein for our predecessor were prepared on a stand-alone basis. The financial information of the Combined Contribution Properties is presented herein on an historical combined basis. Management does not consider the operating results of our predecessor on a stand-alone basis to be indicative of the historical operating results of our company taken as a whole. Therefore, the following discussion relates to the operating results of our predecessor and the Combined Contribution Properties, the other properties contributed to us over which our management has provided continuous common management throughout the applicable reporting periods, on a combined historical basis. Subsequent to the dates they were contributed to us, the financial information for each of our predecessor and the Combined Contribution Properties is included in the financial information for BioMed Realty Trust, which commenced operations on August 11, 2004. Management believes this presentation provides a more meaningful discussion of the operating results of BioMed Realty Trust, our predecessor and the Combined

16


Table of Contents

Contribution Properties. In order to present these results on a meaningful combined basis, the historical combined financial information for all prior periods presented includes combining entries to reflect the partner’s capital of our predecessor which was not owned by management.
Comparison of Three Months Ended June 30, 2005 to Three Months Ended June 30, 2004
     The following table sets forth the basis for presenting the historical financial information.
                                         
    Three Months     Three Months Ended  
    Ended     June 30, 2004  
    June 30, 2005             Combined              
    BioMed Realty             Contribution     Combining        
    Trust, Inc.     Predecessor     Properties     Entries     Total  
Revenues:
                                       
Rental
  $ 20,014     $ 1,575     $ 1,050           $ 2,625  
Tenant recoveries
    8,549       149       189             338  
 
                             
Total revenues
    28,563       1,724       1,239             2,963  
 
                             
Expenses:
                                       
Rental operations
    6,721       66       96             162  
Real estate taxes
    2,476       88       56             144  
Depreciation and amortization
    8,476       236       203             439  
General and administrative
    2,695             48             48  
 
                             
Total expenses
    20,368       390       403             793  
 
                             
Income from operations
    8,195       1,334       836             2,170  
Equity in net income of unconsolidated partnership
    20                          
Interest income
    102             4             4  
Interest expense
    (6,812 )     (703 )     (587 )           (1,290 )
 
                             
Income before minority interests
    1,505       631       253             884  
Minority interests
    (65 )           (71 )     (370 )     (441 )
 
                             
Net income
  $ 1,440     $ 631     $ 182     $ (370 )   $ 443  
 
                             
     Rental Revenues. Rental revenues increased $17.4 million to $20.0 million for the three months ended June 30, 2005 compared to $2.6 million for the three months ended June 30, 2004. The increase was primarily due to the inclusion of rental revenues for the properties acquired in connection with our initial public offering as well as acquisitions subsequent to our initial public offering.
     Tenant Recoveries. Revenues from tenant reimbursements increased $8.2 million to $8.5 million for the three months ended June 30, 2005 compared to $338,000 for the three months ended June 30, 2004. The increase was primarily due to the inclusion of tenant reimbursements for the properties acquired in connection with our initial public offering as well as acquisitions subsequent to our initial public offering.
     Rental Operations Expense. Rental operations expense increased $6.5 million to $6.7 million for the three months ended June 30, 2005 compared to $162,000 for the three months ended June 30, 2004. The increase was primarily due to the inclusion of rental property operations expense for the properties acquired in connection with our initial public offering as well as acquisitions subsequent to our initial public offering.
     Real Estate Tax Expense. Real estate tax expense increased $2.4 million to $2.5 million for the three months ended June 30, 2005 compared to $144,000 for the three months ended June 30, 2004. The increase was primarily due to the inclusion of property taxes for the properties acquired in connection with our initial public offering as well as additional property acquisitions subsequent to our initial public offering.

17


Table of Contents

     Depreciation and Amortization Expense. Depreciation and amortization expense increased $8.1 million to $8.5 million for the three months ended June 30, 2005 compared to $439,000 for the three months ended June 30, 2004. The increase was primarily due to the inclusion of depreciation and amortization expense for the properties acquired in connection with our initial public offering as well as acquisitions subsequent to our initial public offering.
     General and Administrative Expenses. General and administrative expenses increased to $2.7 million for the three months ended June 30, 2005 from $48,000 for the three months ended June 30, 2004. The increase was primarily due to the hiring of new personnel after our initial public offering, the addition of expenses relating to operating as a public company, compensation expense related to vesting of restricted stock compensation awards expensed during the three months ended June 30, 2005 and higher consulting and professional fees associated with corporate governance and Sarbanes-Oxley Section 404 implementation.
     Interest Income. Interest income increased to $102,000 for the three months ended June 30, 2005 from $4,000 for the three months ended June 30, 2004. This is primarily due to interest earned on an increase of funds held by us during the three months ended June 30, 2005.
     Interest Expense. Interest expense increased $5.5 million to $6.8 million for the three months ended June 30, 2005 compared to $1.3 million for the three months ended June 30, 2004. The increase in interest is a result of more overall debt outstanding after the consummation of our initial public offering and the amortization of $2.0 million of loan fees related to the repayment and termination of our unsecured credit facility and our $100.0 million unsecured term loan facility partially offset by a reduction of interest expense in 2005 due to the accretion of debt premium, which decreased interest expense by $390,000.
     Minority Interests. Minority interests decreased to $65,000 for the three months ended June 30, 2005 from $441,000 for the three months ended June 30, 2004. The minority interest allocations for the three months ended June 30, 2005 and 2004 are not comparable due to the initial public offering. The 2004 allocation was a result of the percentage allocation to non-controlling interests of the Combined Contribution Properties and for our predecessor. The 2005 allocation was to the limited partner unit holders of our Operating Partnership.
Comparison of Six Months Ended June 30, 2005 to Six Months Ended June 30, 2004
     The following table sets forth the basis for presenting the historical financial information.
                                         
    Six Months     Six Months Ended  
    Ended     June 30, 2004  
    June 30, 2005             Combined              
    BioMed Realty             Contribution     Combining        
    Trust, Inc.     Predecessor     Properties     Entries     Total  
Revenues:
                                       
Rental
  $ 34,228     $ 3,137     $ 2,096           $ 5,233  
Tenant recoveries
    15,803       299       371             670  
Other income
    3,003                          
 
                             
Total revenues
    53,034       3,436       2,467             5,903  
 
                             
Expenses:
                                       
Rental operations
    13,116       131       170             301  
Real estate taxes
    4,264       176       112             288  
Depreciation and amortization
    14,667       478       407             885  
General and administrative
    5,245             106             106  
 
                             
Total expenses
    37,292       785       795             1,580  
 
                             
Income from operations
    15,742       2,651       1,672             4,323  
Equity in net income of unconsolidated partnership
    71                          
Interest income
    180       1       9             10  
Interest expense
    (8,223 )     (1,389 )     (1,200 )           (2,589 )
 
                             
Income before minority interests
    7,770       1,263       481             1,744  
Minority interests
    (494 )           (143 )     (740 )     (883 )
 
                             
Net income
  $ 7,276     $ 1,263     $ 338     $ (740 )   $ 861  
 
                             

18


Table of Contents

     Rental Revenues. Rental revenues increased $29.0 million to $34.2 million for the six months ended June 30, 2005 compared to $5.2 million for the six months ended June 30, 2004. The increase was primarily due to the inclusion of rental revenues for the properties acquired in connection with our initial public offering as well as acquisitions subsequent to our initial public offering.
     Tenant Recoveries. Revenues from tenant reimbursements increased $15.1 million to $15.8 million for the six months ended June 30, 2005 compared to $670,000 for the six months ended June 30, 2004. The increase was primarily due to the inclusion of tenant reimbursements for the properties acquired in connection with our initial public offering as well as acquisitions subsequent to our initial public offering.
     Other Income. Other income for the six months ended June 30, 2005 is comprised of a gain on early termination of lease of a portion of the Nektar Therapeutics lease at Industrial Road of $3.0 million.
     Rental Operations Expense. Rental operations expense increased $12.8 million to $13.1 million for the six months ended June 30, 2005 compared to $301,000 for the six months ended June 30, 2004. The increase was primarily due to the inclusion of rental property operations expense for the properties acquired in connection with our initial public offering as well as acquisitions subsequent to our initial public offering.
     Real Estate Tax Expense. Real estate tax expense increased $4.0 million to $4.3 million for the six months ended June 30, 2005 compared to $288,000 for the six months ended June 30, 2004. The increase was primarily due to the inclusion of property taxes for the properties acquired in connection with our initial public offering as well as additional property acquisitions subsequent to our initial public offering.
     Depreciation and Amortization Expense. Depreciation and amortization expense increased $13.8 million to $14.7 million for the six months ended June 30, 2005 compared to $885,000 for the six months ended June 30, 2004. The increase was primarily due to the inclusion of depreciation and amortization expense for the properties acquired in connection with our initial public offering as well as acquisitions subsequent to our initial public offering.
     General and Administrative Expenses. General and administrative expenses increased to $5.2 million for the six months ended June 30, 2005 from $106,000 for the six months ended June 30, 2004. The increase was primarily due to the hiring of new personnel after our initial public offering, the addition of expenses relating to operating as a public company, compensation expense related to vesting of restricted stock compensation awards expensed during the six months ended June 30, 2005 and higher consulting and professional fees associated with corporate governance and Sarbanes-Oxley Section 404 implementation.
     Interest Income. Interest income increased to $180,000 for the six months ended June 30, 2005 from $10,000 for the six months ended June 30, 2004. This is primarily due to interest earned on an increase of funds held by us during the six months ended June 30, 2005.
     Interest Expense. Interest expense increased $5.6 million to $8.2 million for the six months ended June 30, 2005 compared to $2.6 million for the six months ended June 30, 2004. The increase in interest is a result of more overall debt outstanding after the consummation of our initial public offering and the amortization of $2.0 million of loan fees related to the repayment and termination of our unsecured credit facility and our $100.0 million unsecured term loan facility partially offset by a reduction of interest expense in 2005 due to the accretion of debt premium, which decreased interest expense by $650,000.
     Minority Interests. Minority interests decreased to $494,000 for the six months ended June 30, 2005 from $883,000 for the six months ended June 30, 2004. The minority interest allocations for the six months ended June 30, 2005 and 2004 are not comparable due to the initial public offering. The 2004 allocation was a result of the percentage allocation to non-controlling interests of the Combined Contribution Properties and for our predecessor. The 2005 allocation was to the limited partner unit holders of our Operating Partnership.

19


Table of Contents

Cash Flows
Comparison of Six Months Ended June 30, 2005 to Six Months Ended June 30, 2004
                         
    Six Months Ended June 30,  
            Predecessor and        
    BioMed     Combined        
    Realty Trust,     Contribution        
    Inc.     Properties        
    2005     2004     Change  
Net cash provided by (used in) operating activities
  $ 23,038     $ (827 )   $ 23,865  
Net cash used in investing activities
    (486,134 )           (486,134 )
Net cash provided by financing activities
    548,241       1,002       547,239  
Ending cash balance
    113,014       530       112,484  
     Cash and cash equivalents were $113.0 million and $530,000, respectively, at June 30, 2005 and June 30, 2004.
     Net cash provided by operating activities increased $23.9 million to $23.0 million for the six months ended June 30, 2005 compared to cash used of $827,000 for the six months ended June 30, 2004. The increase was primarily due to the increase in operating income before depreciation and amortization, and changes in other operating assets and liabilities.
     Net cash used in investing activities was $486.1 million for the six months ended June 30, 2005 compared to $0 for the six months ended June 30, 2004. The increase was primarily due to amounts paid to acquire interests in real estate entities and funds held in escrow for acquisitions partially offset by receipts of master lease payments.
     Net cash provided by financing activities increased $547.2 million to $548.2 million for the six months ended June 30, 2005 compared to $1.0 million for the six months ended June 30, 2004. The increase was primarily due to net proceeds from our follow-on common stock offering in June 2005 and secured term loan proceeds offset by principal payments on mortgage loans, and payments of dividends and distributions.
Funds from Operations
     We present funds from operations, or FFO, because we consider it an important supplemental measure of our operating performance and believe it is frequently used by securities analysts, investors and other interested parties in the evaluation of REITs, many of which present FFO when reporting their results. FFO is intended to exclude GAAP historical cost depreciation and amortization of real estate and related assets, which assumes that the value of real estate assets diminishes ratably over time. Historically, however, real estate values have risen or fallen with market conditions. Because FFO excludes depreciation and amortization unique to real estate, gains and losses from property dispositions and extraordinary items, it provides a performance measure that, when compared year over year, reflects the impact to operations from trends in occupancy rates, rental rates, operating costs, development activities and interest costs, providing perspective not immediately apparent from net income. We compute FFO in accordance with standards established by the Board of Governors of the National Association of Real Estate Investment Trusts, or NAREIT, in its March 1995 White Paper (as amended in November 1999 and April 2002). As defined by NAREIT, FFO represents net income (computed in accordance with GAAP), excluding gains (or losses) from sales of property, plus real estate related depreciation and amortization (excluding amortization of loan origination costs) and after adjustments for unconsolidated partnerships and joint ventures. Our computation may differ from the methodology for calculating FFO utilized by other equity REITs and, accordingly, may not be comparable to such other REITs. Further, FFO does not represent amounts available for management’s discretionary use because of needed capital replacement or expansion, debt service obligations, or other commitments and uncertainties. FFO should not be considered as an alternative to net income (loss) (computed in accordance with GAAP) as an indicator of our financial performance or to cash flow from operating activities (computed in accordance with GAAP) as an indicator of our liquidity, nor is it indicative of funds available to fund our cash needs, including our ability to pay dividends or make distributions.

20


Table of Contents

     The following table provides the calculation of our FFO and a reconciliation to net income (in thousands, except per share amounts):
                 
    For the Six     For the Three  
    Months Ended     Months Ended  
    June 30, 2005     June 30, 2005  
Net income
  $ 7,276     $ 1,440  
Adjustments
               
Operating partnership unit share in earnings of minority interest
    669       131  
Depreciation and amortization — real estate assets
    14,677       8,496  
 
           
Funds from operations
  $ 22,622     $ 10,067  
 
           
Funds from operations per share — diluted
  $ 0.65     $ 0.29  
 
           
Weighted-average common shares outstanding — diluted
    34,544,121       34,893,367  
 
           
Liquidity and Capital Resources
     Our short-term liquidity requirements consist primarily of funds to pay for operating expenses and other expenditures directly associated with our properties, including:
    interest expense and scheduled principal payments on outstanding indebtedness,
 
    general and administrative expenses,
 
    future distributions expected to be paid to our stockholders, and
 
    capital expenditures, tenant improvements and leasing commissions.
     We expect to satisfy our short-term liquidity requirements through our existing working capital and cash provided by our operations. Our rental revenue, provided by our triple-net leases, and minimal unreimbursed operating expenses generally provide cash inflows to meet our debt service obligations, pay general and administrative expenses, and fund regular distributions.
     Our long-term liquidity requirements consist primarily of funds to pay for scheduled debt maturities, renovations, expansions and other non-recurring capital expenditures that need to be made periodically and the costs associated with acquisitions of properties that we pursue. We expect to satisfy our long-term liquidity requirements through our existing working capital, cash provided by operations, long-term secured and unsecured indebtedness, the issuance of additional equity or debt securities and the use of net proceeds from the disposition of non-strategic assets. We also expect to use funds available under our unsecured revolving credit facility to finance acquisition and development activities and capital expenditures on an interim basis.
     Our total market capitalization at June 30, 2005 was approximately $1.7 billion based on the market closing price of our common stock at June 30, 2005 of $23.85 per share (assuming the conversion of 2,870,564 operating partnership units into common stock) and our debt outstanding was approximately $499.8 million (exclusive of accounts payable and accrued expenses). As a result, our debt to total market capitalization ratio was approximately 29.8% at June 30, 2005. Our board of directors adopted a policy of limiting our indebtedness to approximately 60% of our total market capitalization. However, our board of directors may from time to time modify our debt policy in light of current economic or market conditions including, but not limited to, the relative costs of debt and equity capital, market conditions for debt and equity securities and fluctuations in the market price of our common stock. Accordingly, we may increase or decrease our debt to market capitalization ratio beyond the limit described above.
     On May 31, 2005, we entered into three credit facilities with KeyBank National Association and other lenders under which we initially borrowed $485.0 million of a total of $600.0 million available under these facilities. The credit facilities include an unsecured revolving credit facility of $250.0 million, under which we initially borrowed $135.0 million, an unsecured term loan of $100.0 million and a secured term loan of $250.0 million. We borrowed

21


Table of Contents

the full amounts under the unsecured term loan and secured term loan. The unsecured revolving credit facility and unsecured term loan have a maturity date of May 30, 2008 and bear interest at a floating rate equal to, at our option, either (1) reserve adjusted LIBOR plus a spread which ranges from 120 to 200 basis points, depending on our leverage, or (2) the higher of (a) the prime rate then in effect plus a spread which ranges from 0 to 50 basis points and (b) the federal funds rate then in effect plus a spread which ranges from 50 to 100 basis points, in each case, depending on our leverage. We may extend the maturity date of the unsecured credit facilities to May 30, 2009 after satisfying certain conditions and paying an extension fee, and we may increase the amount of the revolving credit facility to $400.0 million upon satisfying certain conditions. The secured term loan, which has a maturity date of May 30, 2010, is initially secured by 13 of our properties and bears interest at a floating rate equal to, at our option, either (1) reserve adjusted LIBOR plus 225 basis points or (2) the higher of (a) the prime rate then in effect plus 50 basis points and (b) the federal funds rate then in effect plus 100 basis points. The secured term loan is also secured by our interest in any distributions from these properties and a pledge of the equity interests in a subsidiary owning one of these properties. We may not prepay the secured term loan prior to May 31, 2006. We entered into an interest rate swap agreement in connection with the closing of the credit facilities, which will have the effect of fixing the interest rate on the secured term loan at 6.4%. The $100.0 million unsecured term loan facility was fully repaid with the proceeds from our common stock offering and terminated on June 27, 2005. Accordingly, related loan costs of $1.1 million have been fully amortized. At June 30, 2005, we had no outstanding borrowings on our unsecured revolving credit facility.
     The terms of the credit agreements include certain restrictions and covenants, which limit, among other things, the payment of dividends, and the incurrence of additional indebtedness and liens. The terms also require compliance with financial ratios relating to the minimum amounts of net worth, fixed charge coverage, unsecured debt service coverage, interest coverage, the maximum amount of secured, variable-rate and recourse indebtedness, leverage ratio, and certain investment limitations. The dividend restriction referred to above provides that, except to enable us to continue to qualify as a REIT for federal income tax purposes, we will not for any fiscal quarter ending on or prior to September 30, 2005 or during any four consecutive quarters thereafter, make distributions with respect to common stock or other equity interests in an aggregate amount in excess of 95% of funds from operations, as defined, for such period, subject to other adjustments or make distributions in excess of 100% of funds available for distribution, as defined, for such period, subject to other adjustments. Management believes that we were in compliance with the covenants as of June 30, 2005.
     A summary of our outstanding consolidated mortgage indebtedness as of June 30, 2005 is as follows (in thousands):
                                                         
    Stated                                        
    Fixed     Effective             Unamortized     Carrying     Carrying        
    Interest     Interest     Principal     Premium     Value at     Value at        
    Rate     Rate     Amount     Amount     June 30, 2005     December 31, 2004     Maturity Date  
Ardentech Court
    7.25 %     5.06 %   $ 4,787     $ 572     $ 5,359     $ 5,440     July 1, 2012
Bayshore Boulevard
    4.55 %     4.55 %     16,289             16,289       16,438     January 1, 2010
Bridgeview
    8.07 %     5.04 %     11,782       1,703       13,485       13,681     January 1, 2011
Eisenhower Road
    5.80 %     4.63 %     2,229       67       2,296       2,331     May 5, 2008
Elliott Avenue
    7.38 %     4.63 %     16,765       923       17,688       18,107     November 24, 2007
40 Erie Street
    7.34 %     4.90 %     20,041       1,302       21,343           August 1, 2008
Kendall Square D
    6.38 %     5.45 %     73,078       5,486       78,564           December 1, 2018
Lucent Drive
    5.50 %     5.50 %     5,986             5,986           January 21, 2015
Monte Villa Parkway
    4.55 %     4.55 %     9,916             9,916       10,007     January 1, 2010
Nancy Ridge Drive
    7.15 %     5.57 %     6,989       670       7,659           September 1, 2012
Science Center Drive
    7.65 %     5.04 %     11,638       1,549       13,187       13,376     July 1, 2011
Sidney Street
    7.23 %     5.11 %     31,755       3,642       35,397           June 1, 2012
Towne Centre Drive
    4.55 %     4.55 %     22,649             22,649       22,856     January 1, 2010
 
                                               
 
                  $ 233,904     $ 15,914     $ 249,818     $ 102,236          
 
                                               
     As of June 30, 2005, we had a $250.0 million secured term loan outstanding and no borrowings outstanding on our unsecured revolving credit facility.
     Premiums were recorded upon assumption of the notes at the time of the related acquisition to account for above-market interest rates. Amortization of these premiums is recorded as a reduction to interest expense over the remaining term of the respective note.

22


Table of Contents

     As of June 30, 2005, principal payments due for our total consolidated indebtedness were as follows (in thousands) (excluding unamortized debt premium of $15,914):
         
2005
  $ 2,502  
2006
    5,380  
2007
    21,213  
2008
    24,076  
2009
    4,624  
Thereafter
    426,109  
 
     
 
  $ 483,904  
 
     
     We record all derivatives on the balance sheet at fair value. The accounting for changes in the fair value of derivatives depends on the intended use of the derivative and the resulting designation. Derivatives used to hedge the exposure to changes in the fair value of an asset, liability, or firm commitment attributable to a particular risk, such as interest rate risk, are considered fair value hedges. Derivatives used to hedge the exposure to variability in expected future cash flows, or other types of forecasted transactions, are considered cash flow hedges.
     Our objective in using derivatives is to add stability to interest expense and to manage our exposure to interest rate movements or other identified risks. To accomplish this objective, we primarily use interest rate swaps as part of our cash flow hedging strategy. Interest rate swaps designated as cash flow hedges involve the receipt of variable-rate amounts in exchange for fixed-rate payments over the life of the agreements without exchange of the underlying principal amount. During 2005, such derivatives have been used to hedge the variable cash flows associated with existing variable-rate debt. We formally documented the hedging relationship and account for our interest rate swap agreement as a cash flow hedge.
     As of June 30, 2005, no derivatives were designated as fair value hedges or hedges of net investments in foreign operations. Additionally, we do not use derivatives for trading or speculative purposes and currently do not have any derivatives that are not designated as hedges. As of June 30, 2005, one interest rate swap had a notional amount of $250.0 million, whereby we pay a fixed rate of 6.4% and receive a floating one-month LIBOR. This agreement expires in June 2010, and no initial investment was made to enter into this agreement. At June 30, 2005, the interest rate swap agreement had a fair value of $1.8 million which is included in other liabilities. The change in net unrealized gains/losses of $1.8 million in 2005 for derivatives designated as cash flow hedges is separately disclosed in the statement of changes in stockholders’ equity and comprehensive income. No hedge ineffectiveness on cash flow hedges has been recognized during 2005.
Off Balance Sheet Arrangements
     As of June 30, 2005, we had an investment in McKellar Court, L.P., which owns a single tenant occupied property located in San Diego. The acquisition of the investment in McKellar Court closed on September 30, 2004. McKellar Court is a variable interest entity as defined in Financial Accounting Standards Board Interpretation No. 46 (revised December 2003), Consolidation of Variable Interest Entities; however, we are not the primary beneficiary. The limited partner is also the only tenant in the property and will bear a disproportionate amount of any losses. We, as the general partner, will receive 21% of the operating cash flows and 75% of the gains upon sale of the property. We account for our general partner interest using the equity method. Significant accounting policies used by the unconsolidated partnership that owns this property are similar to those used by us. At June 30, 2005, our share of the debt related to this investment was equal to approximately $2.3 million (excluding unamortized debt premium). The assets and liabilities of McKellar Court were $17.7 million and $11.6 million, respectively, at June 30, 2005. The table below summarizes our share of the outstanding debt (based on our respective ownership interests) of this investment at June 30, 2005 (in thousands):
                                                 
    Stated                                  
    Fixed     Effective             Unamortized     Total        
    Interest     Interest     Principal     Premium     Book        
    Rate     Rate     Amount     Amount     Value     Maturity Date  
McKellar Court
    8.56 %     4.63 %   $ 2,266     $ 385     $ 2,651     January 1, 2010

23


Table of Contents

Cash Distribution Policy
     We will elect to be taxed as a REIT under the Code commencing with our taxable year ended December 31, 2004. To qualify as a REIT, we must meet a number of organizational and operational requirements, including the requirement that we distribute currently at least 90% of our ordinary taxable income to our stockholders. It is our intention to comply with these requirements and maintain our REIT status. As a REIT, we generally will not be subject to corporate federal, state or local income taxes on taxable income we distribute currently (in accordance with the Code and applicable regulations) to our stockholders. If we fail to qualify as a REIT in any taxable year, we will be subject to federal, state and local income taxes at regular corporate rates and may not be able to qualify as a REIT for subsequent tax years. Even if we qualify for federal taxation as a REIT, we may be subject to certain state and local taxes on our income and to federal income and excise taxes on our undistributed taxable income, i.e., taxable income not distributed in the amounts and in the time frames prescribed by the Code and applicable regulations thereunder.
     Since our initial public offering through June 30, 2005, we have declared aggregate dividends on our common stock and distributions on our operating partnership units of $0.9597 per common share and unit, representing three full quarterly dividends for the fourth quarter of 2004 and first and second quarters of 2005 of $0.27 each and a partial third quarter dividend for 2004 of $0.1497 per common share and unit. The dividends are equivalent to an annual rate of $1.08 per common share and unit.
Inflation
     Some of our leases contain provisions designed to mitigate the adverse impact of inflation. These provisions generally increase rental rates during the terms of the leases either at fixed rates or indexed escalations (based on the Consumer Price Index or other measures). We may be adversely impacted by inflation on the leases that do not contain indexed escalation provisions. In addition, most of our leases require the tenant to pay an allocable share of operating expenses, including common area maintenance costs, real estate taxes and insurance. This may reduce our exposure to increases in costs and operating expenses resulting from inflation, assuming our properties remain leased and tenants fulfill their obligations to reimburse us for such expenses.
     Our unsecured revolving credit facility bears interest at a variable rate, which will be influenced by changes in short-term interest rates, and will be sensitive to inflation.
ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK
     Our future income, cash flows and fair values relevant to financial instruments depend upon prevailing market interest rates. Market risk is the exposure to loss resulting from changes in interest rates, foreign currency exchange rates, commodity prices and equity prices. The primary market risk to which we believe we are exposed is interest rate risk. Many factors, including governmental monetary and tax policies, domestic and international economic and political considerations and other factors that are beyond our control contribute to interest rate risk.
     As of June 30, 2005, our consolidated debt consisted of 13 fixed-rate notes with a carrying value of $249.8 million (including $15.9 million of unamortized premium) and a weighted-average effective interest rate of 5.06% and our secured term loan with an outstanding balance of $250.0 million. We entered into an interest rate swap agreement, which will have the effect of fixing the interest rate on the secured term loan at 6.4%. To determine fair value, the fixed-rate debt is discounted at a rate based on an estimate of current lending rates, assuming the debt is outstanding through maturity and considering the notes’ collateral. At June 30, 2005, the fair value of the fixed-rate debt was estimated to be $249.9 million compared to the net carrying value of $249.8 million (including $15.9 million of unamortized premium). We do not believe that the interest rate risk represented by our fixed rate debt was material as of June 30, 2005 in relation to total assets of $1.3 billion and equity market capitalization of $1.2 billion of our common stock and operating units. At June 30, 2005, the fair value of the debt of our investment in unconsolidated partnership approximated the carrying value.

24


Table of Contents

     In order to modify and manage the interest rate characteristics of our outstanding debt and to limit the effects of interest rate risks on our operations, we may utilize a variety of financial instruments, including interest rate swaps, caps and treasury locks in order to mitigate our interest rate risk on a related financial instrument. The use of these types of instruments to hedge our exposure to changes in interest rates carries additional risks, including counterparty credit risk, the enforceability of hedging contracts and the risk that unanticipated and significant changes in interest rates will cause a significant loss of basis in the contract. To limit counterparty credit risk we will seek to enter into such agreements with major financial institutions with high credit ratings. There can be no assurance that we will be able to adequately protect against the foregoing risks and will ultimately realize an economic benefit that exceeds the related amounts incurred in connection with engaging in such hedging activities. We do not enter into such contracts for speculative or trading purposes.
ITEM 4. CONTROLS AND PROCEDURES
     We maintain disclosure controls and procedures that are designed to ensure that information required to be disclosed in our Exchange Act reports is recorded, processed, summarized and reported within the time periods specified in the Securities and Exchange Commission’s rules and forms and that such information is accumulated and communicated to our management, including our Chief Executive Officer and Chief Financial Officer, as appropriate, to allow for timely decisions regarding required disclosure. In designing and evaluating the disclosure controls and procedures, management recognizes that any controls and procedures, no matter how well designed and operated, can provide only reasonable assurance of achieving the desired control objectives, and management is required to apply its judgment in evaluating the cost-benefit relationship of possible controls and procedures. Also, we have investments in an unconsolidated entity. As we manage this entity, our disclosure controls and procedures with respect to such entity are essentially consistent with those we maintain with respect to our consolidated entities.
     As required by Securities and Exchange Commission Rule 13a-15(b), we carried out an evaluation, under the supervision and with the participation of our management, including our Chief Executive Officer and Chief Financial Officer, of the effectiveness of the design and operation of our disclosure controls and procedures as of the end of the period covered by this report. Based on the foregoing, our Chief Executive Officer and Chief Financial Officer concluded that our disclosure controls and procedures were effective at the reasonable assurance level.
     There has been no change in our internal control over financial reporting during the quarter ended June 30, 2005 that has materially affected, or is reasonably likely to materially affect, our internal control over financial reporting.
PART II — OTHER INFORMATION
ITEM 1. LEGAL PROCEEDINGS
     We are not currently a party to any legal proceedings nor, to our knowledge, is any legal proceeding threatened against us that would have a material adverse effect on our financial position, results of operations or liquidity.
ITEM 2. UNREGISTERED SALES OF EQUITY SECURITIES AND USE OF PROCEEDS
     None.
ITEM 3. DEFAULTS UPON SENIOR SECURITIES
     None.
ITEM 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS
     Our annual meeting of stockholders was held on May 18, 2005. The only matter voted upon at our annual meeting consisted of the election of seven of our directors to serve until the next annual meeting of stockholders and until their successors are duly elected and qualify. Stockholders elected the directors at our annual meeting by the following vote:
                 
    Votes For   Votes Withheld
Alan D. Gold
    29,630,652       227,224  
Barbara R. Cambon
    29,484,947       372,929  
Edward A. Dennis, Ph.D.
    29,123,282       734,594  
Gary A. Kreitzer
    29,747,658       110,218  
Mark J. Riedy, Ph.D.
    28,808,776       1,049,100  
Theodore D. Roth
    29,123,582       734,294  
M. Faye Wilson
    29,657,283       200,593  

25


Table of Contents

ITEM 5. OTHER INFORMATION
     None.
ITEM 6. EXHIBITS
         
Exhibit    
Number   Description of Exhibit
  10.1    
Agreement for Purchase of Real Estate, dated as of April 15, 2005, between BioMed Realty, L.P. and The Lyme Timber Company.(1)
  10.2    
Radnor Technology and Research Center Office and Cafeteria Lease, dated as of June 21, 2002, between BMR-145 King of Prussia Road LP and Centocor, Inc.(2)
  10.3    
First Amendment to Lease, dated as of January 19, 2004, between BMR-145 King of Prussia Road LP and Centocor, Inc.(2)
  10.4    
Second Amendment to Radnor Technology and Research Center Office and Cafeteria Lease, dated as of April 19, 2005, between BMR-145 King of Prussia Road LP and Centocor, Inc.(2)
  10.5    
Secured Term Loan Agreement, dated as of May 31, 2005, by and among BioMed Realty, L.P., KeyBank National Association, as Administrative Agent, and certain lenders party thereto.(3)
  10.6    
Form of Secured Term Loan Note.(3)
  10.7    
Unsecured Credit Agreement, dated as of May 31, 2005, by and among BioMed Realty, L.P., KeyBank National Association, as Administrative Agent, and certain lenders party thereto.(3)
  10.8    
Form of Line Note under Unsecured Credit Agreement.(3)
  10.9    
Form of Term Note under Unsecured Credit Agreement.(3)
  10.10    
Assumption, Consent and Loan Modification Agreement, dated as of May 31, 2005, by and among KS Parcel D, LLC, The Lyme Timber Company, BioMed Realty Trust, Inc., BMR – 500 Kendall Street LLC and The Variable Annuity Life Insurance Company.(3)
  10.11    
Promissory Note, dated as of November 21, 2003, to The Variable Annuity Life Insurance Company.(3)
  10.12    
Mortgage, Security Agreement, Fixture Filing, Financing Statement and Assignment of Leases and Rents, dated as of November 21, 2003, in favor of The Variable Annuity Life Insurance Company.(3)
  10.13    
Lease, dated as of August 28, 2000, by and between Kendall Square, LLC and Genzyme Corporation.(3)
  10.14    
First Amendment to Lease, dated as of August 1, 2003, by and between Kendall Square, LLC and Genzyme Corporation.(3)
  10.15    
Lease, dated as of January 18, 2001, by and between Kendall Square, LLC and Vertex Pharmaceuticals Incorporated.(3)
  10.16    
First Amendment to Lease, dated as of May 9, 2002, by and between Kendall Square, LLC and Vertex Pharmaceuticals Incorporated.(3)
  10.17    
Second Amendment to Lease, dated as of September 16, 2003, by and between KS Parcel A, LLC, as successor to Kendall Square, LLC, and Vertex Pharmaceuticals Incorporated.(3)
  10.18    
Third Amendment to Lease, dated as of December 22, 2003, by and between KS Parcel A, LLC, as successor to Kendall Square, LLC, and Vertex Pharmaceuticals Incorporated.(3)
  10.19    
Fourth Amendment to Lease, dated as of September 30, 2004, by and between KS Parcel A, LLC, as successor to Kendall Square, LLC, and Vertex Pharmaceuticals Incorporated.(3)
  10.20    
Fifth Amendment to Lease, dated as of April 15, 2005, by and between KS Parcel A, LLC, as successor to Kendall Square, LLC, and Vertex Pharmaceuticals Incorporated.(3)
  10.21    
Lease, dated as of September 17, 1999, by and between Trustees of Fort Washington Realty Trust and Vertex Pharmaceuticals Incorporated.(3)

26


Table of Contents

         
Exhibit    
Number   Description of Exhibit
  10.22    
Lease, dated March 3, 1995, by and between Fort Washington Limited Partnership and Vertex Pharmaceuticals Incorporated.(3)
  10.23    
First Amendment to Lease, dated as of December 1996, by and between David E. Clem and David M. Roby, as Trustees of Fort Washington Realty Trust, and Vertex Pharmaceuticals Incorporated.(3)
  10.24    
Second Amendment to Lease, dated as of June 13, 1997, by and between David E. Clem and David M. Roby, as Trustees of Fort Washington Realty Trust, and Vertex Pharmaceuticals Incorporated.(3)
  10.25    
Third Amendment to Lease, dated as of October 1, 1998, by and between David E. Clem and David M. Roby, as Trustees of Fort Washington Realty Trust, and Vertex Pharmaceuticals Incorporated.(3)
  10.26    
Fourth Amendment to Lease, dated as of February 22, 2000, by and between David E. Clem and David M. Roby, as Trustees of Fort Washington Realty Trust, and Vertex Pharmaceuticals Incorporated.(3)
  10.27    
Fifth Amendment to Lease, dated as of May 1, 1999, by and between David E. Clem and David M. Roby, as Trustees of Fort Washington Realty Trust, and Vertex Pharmaceuticals Incorporated.(3)
  10.28    
Sixth Amendment to Lease, dated as of April 6, 2005, by and between David E. Clem and David M. Roby, as Trustees of Fort Washington Realty Trust, and Vertex Pharmaceuticals Incorporated.(3)
  31.1    
Certification of Chief Executive Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
  31.2    
Certification of Chief Financial Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
  32.1    
Certifications of Chief Executive Officer and Chief Financial Officer pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.
 
(1)   Incorporated herein by reference to BioMed Realty Trust Inc.’s Current Report on Form 8-K filed with the Securities and Exchange Commission on April 19, 2005.
 
(2)   Incorporated herein by reference to BioMed Realty Trust Inc.’s Current Report on Form 8-K filed with the Securities and Exchange Commission on April 25, 2005.
 
(3)   Incorporated herein by reference to BioMed Realty Trust Inc.’s Current Report on Form 8-K filed with the Securities and Exchange Commission on June 3, 2005.

27


Table of Contents

SIGNATURES
     Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.
         
  BioMed Realty Trust, Inc.
 
 
Dated: August 11, 2005  /s/ ALAN D. GOLD    
  Alan D. Gold   
  Chairman of the Board, President and Chief Executive Officer (Principal Executive Officer)   
 
     
  /s/ JOHN F. WILSON, II    
  John F. Wilson, II   
  Chief Financial Officer (Principal Financial Officer)   
 

28